You are asking the right questions. Pump tunnel design is the reason why different skis, pumps, props, pump tuning etc all vary and its difficult to offer an answer from one set up to the next. Ask P&P performance why he has to spend hours tuning each particular boat. These are not plug and play performance items. You can get close but real tuning takes work, constant work.
I'll explain it from an experience we had. XScream KDX, 155 tunnel, 148 shoe. Took everything tuned properly in the KDX and moved it to a stock Yamaha SJ hull. Would not work properly, Imagine a 100 mm pump tunnel, with a 200mm pump. Your pulling through a small opening into a pump. Search flow through an orifice. Very interesting stuff. That Xscream tunnel was far superior in design and water feed to the pump that was the older designed SJ hull. The SJ intake tract was designed for a 650 motor and a 140 mm pump, IMO.
The competition XFS intake is supposedly designed superior, I havent tried one back to back myself, I have ridden one but not built one and then a regular XFS to do a full comparison. From building a new XFS and Edge, the tunnels are large, but you can see in the video different. There is a restriction at the shoe area. I know you're probably thinking why not use the best design possible where ever possible. IMO, if you do that the smaller motors and pumps wont work as well. That is why Rickter has designed two tunnels for the XFS.
Who wants to buy both, build one, then swap all parts over and see how they compare? Let me know how that goes.