94 Blaster running poorly

Got any suggestions. Runs fine for a couple minutes then it seems like its losing a cylinder, blaaaaw blaaaaw blaaaaw, let it idle or shut it off, start it up and it runs fine for little while longer. Thought I had water behind the diafram in the carb, took it off, cleaned it, its perfect. I am leaning toward CDI or Stator or coil now, I think its electronic. Plugs are wet when we shut if off and check. Info is appreciated.
 
I had coils going out on a GP1200.. did the exact same thing.. coils would get some heat and start to crap out... would never completely die, but weak enough where plugs would look wet. Run awesome for about 5-10 mins....
 
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