Custom/Hybrid Help with alignment

All the sudden in my bob i started to have a rattling noise coming from my pump area I did have to pull the back two bolts out of the pump that's mounts it to the hull. It didn't have any shims to begin with. It was fine before I did this what could have changed. Now it sounds like a sea doo with a wore out wear ring. What's the first thing to check. Thanks Chase
 
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