So far I have gone through the stator which is OEM 3 years old, visually looking good and checked with multi-meter, Ignition (cables) are new, I run single 48 Novi recently rebuilt and clean, fuel filter new, fuel pump supplies fuel sufficient, E-box dry and clean.
On the trailer, ski fires right up and revs crisp and clean all the way, no bad symptoms. There is only this almost unnoticeable bottom end hesitation for a split second when I rapidly open the throttle all the way.
When the ski is in the water it will start at first and run fine on idle or very little throttle. If I hit the throttle hard all the way up, the engine will respond, but as soon as I let off the throttle ski will die. After that I will have to crank for good over 10-15 secs or I will have to wait for 30 secs before the ski starts again. Almost every time when that happens it will detonates once in the exhaust (may be backfires) and after more continues cranking the ski will fire up again and idle-run clean like nothing happened. This will repeat every time I hit the throttle hard.
I already purchased a new MSD to see if that will change anything...
P.S. I had the engine/ebox sit on the floor for a month, when I pulled it out it was running fine and I did not have that problem.