First, your bike's chamber is aircooled. It has constant air flow over it. The ski has an enclosed bilge. The watercraft engine has quite a bit more load at all times and runs WOT for a majority of its lifetime. It gets hotter than a bike does.
Second, the wet pipes (spray internally) have the injection primarily for performance reasons.
A typical 2-stroke pipe hits at one relatively narrow RPM band. Your bike has a transmission, so it is relatively easy to work within that RPM band.
A ski is direct drive, no transmission.
What makes the pipe hit at a certain RPM is the length of the chamber. Without getting into too much detail, the length of the chamber determines where the motor will hit.
Injecting water into the exhaust stream cools it. This slows down the sonic exhaust wave traveling down the pipe, essentially making the chamber appear longer than it is.
The amount of water injected depends on engine RPM (coolant pressure, really).
The end effect is a variable length pipe.