I am torn on this subject at the moment and piecing a second pump together just to do some testing. I run a setback mag in my Matrix and while I love the thrust and hookup it offers, i'm missing hull slide. Any power whatsover causes the ski to immediately hook up and straighten out which, in some cases is very desireable, but others not as forgiving and as much fun. It will really come down to how you wanna ride.
You cannot beat the power transfer and hookup of the mag pump but I am really looking to try out a non setback mag to see if it is a healthy enough compromise. I agree with Tzane, it's so hard to give it up once you have it so I don't know where I'll end up.
Unless you ride alot of whitewater and chopped up surf, which is very hard to find around Edmonton, I would say save the cost of the driveshaft and stick with the standard mag.