It's more about the bonding characteristics of polyester vs epoxy resin than Bondo vs another brand. My square is patched on the side of the bottom deck with bondo polyester resin. It's holding up fine. However, if any significant impact or stress was to be applied, it would delaminate before the same patch with epoxy would.
Surface prep is the most important thing here. Epoxy, polyester, vinylester... You can chisel it all off a poorly prepped surface with little effort.
I've never used the west system stuff, but many seem to like it. For general layup, I use the uscomposites thin epoxy.
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