Sorry for the late response, party went longer than expected........
1. My hex bolts are 7 1/2 in long
2. They thread into the case 17 revolutions (easy depth comparison)
3. The long threaded end is in the case as previously stated
4. The thrust head is 1inch thick @ the girdle nut recessed hole
5. The ADA head is 1 1/4 thick @ the girdle nut (no recess
6. The 701 61x cylinder is roughly 4 5/8 inch tall
7. Hex bolts are 10x1.25 diameter and thread pitch
8. From these measurements the hex bolts are 3/8 inch to long and need 3/8 inch more of threaded area on top....................
I have a taller stroker cylinder, the deck is measuring roughly 5 inches with base gasket above the case and the Thrust head fits normally with one flat washer. With the head off I have 1 32/64th of hex bolt protruding above the cylinder and it's bolts down normally. Thrust makes quality parts IMO and the extra hex length is good in a way because it allows it to fit more set ups with different cylinder heights, you can add washers to take up some slack but if the hex bolts to short your done, can't make it longer
Make sure your case holes are clear like previously stated, and add washers as mentioned or have your hex bolts shortened and threaded more on the head side by 3/8 inch roughly
Hope this helps