For what it's worth, one of my four motor mounts I had already done a somewhat quick and dirty repair in hopes of having the ski rideable for the end of last season. That didn't work out and now I ended up grinding it off with all of the rest to (hopefully) redo a little nicer. I used epoxy resin for that and grinding it off the stuff was on there very tenaciously. Definitely no way it would pry off. The rest of the mounts also had an "after the fact" appearance, and there is a noticeable difference between whatever resin was used for them and the original resin from the hull. I don't know if that means they were epoxy, but I suspect it, either way the parts attached to the hull were again on there very tenaciously, unfortunately they were not bonded to the aluminum inserts very well, and the filler under the inserts was some type of foam that was water logged and not bonded to the inserts at all. The whole thing was quite a mess, I think somebody re-glassed over the inserts at least once, maybe more than once, which would explain why the motor alignment was too high. I think by the time I got down to the original hull I'd been through at least three different types of resin.
So end result I'm pretty confident the epoxy will stick to the hull well.
I can tell that I ground too far in places and there are thin spots in the hull, so the plan is to identify thin spots and add local reinforcement, then line the entire bottom under the motor with a layer or maybe two, then build up the individual motor mounts on that, so should be a lot of bonding surface area.
All of the comments and tips are much appreciated. I've never done anything like this before so very much a learning process for me.