You're that far into it now, get the crank checked if you arent sure. Bottom ends dont always make noise but if its worn enough to give even a fraction of a mm movement it will end up being a bad, and very quick, first ride after the top end rebuild.
Was anything missing or broken when you pulled the piston out? Ring, clip? Something rattling around and could easly now be in the bottom end.
Nice bike, good luck sorting and getting back out soon.