I'll offer some opinion, for what it's worth.
1. my (admittedly limited) experience is that the choke will not affect jettting, but the flame arrestor will. It's a shame that all of the jetting info out there usually people don't bother to mention even if they're using stock vs aftermarket pods. I got an unexpected lesson on this one time when I accidentally left the 90 deg elbow off of a stock flame arrestor and had a very noticeable lean hesitation, put it back on and ran great. I was amazed that it could make that much of a difference.
2. I wouldn't run stainless steel reeds purely due to peace of mind. I have no idea if there is a real performance bennefit, but they scare me.
3. I'm pretty sure the wet jet uses the same reeds and cages, I have a friend who recently switched stock 61x to a wet jet intake and he used the stock reeds and cages.